Recent key publications - Biospecimens Research Group and Tumour Bank
Ubaudi F., Catchpoole D.R., Guo D., Simoff S.J., and Kennedy P.J., "Microarray data mining: selecting trustworthy genes with Gene Feature Ranking." In Domain Driven Data Mining: Domain Problems and Applications 2008 (Eds: Longbing Cao, Philip S. Yu, Chengqi Zhang, Huaifeng Zhang), Springer, in press.
Kennedy P.J., Simoff S.J., Catchpoole D.R, Skillicorn D.B., Ubaudi F. and Al Oqaily A., "Integrative visual data mining to biomedical data: Investigating cases in Chronic Fatigue Syndrome and Acute Lymphoblastic Leukaemia.", (Eds S. J. Simoff, M. Böhlen and A. Mazeika), in Lecture Notes in Computer Science, Volume 4404, Visual Data Mining: Theory, Techniques and Tools for Visual Analytics., Springer, Heidelberg, 367-388, 2008.
Catchpoole D.R, Guo D., Jiang H., Biesheuvel C. "Predicting outcome in childhood acute lymphoblastic leukaemia using gene expression profiling: Prognostication or protocol selection?", Blood, 111(4), 2486-2487, 2008.
Margetts C.D.E., Morris M., Astuti D., Gentle D.C., Cascon A., McRonald F.E., Catchpoole D.R., Robledo M., Neumann H.P.H., Latif F. and Maher E.R., "Evaluation of a functional epigenetic approach to identify promoter region methylation in phaeochromocytoma.", Endocrine-Related cancer, 15, , 2008.
Catchpoole D., DeFazio A., Devereux L., Fleming M., Hof M., Schmidt C., Thorne H., and Zeps N., "The importance of biorepository networks: The Australian Biospecimen Network-Oncology". Australian Journal for Medical Science, 28(1), 16-20, 2007.
Craig C. Whiteford , Sven Bilke, Braden T. Greer, Qingrong Chen, Till A. Braunschweig, Nicola Cenacchi, Jun S. Wei, Malcolm A. Smith, Peter Houghton, Christopher Morton, Patrick C. Reynolds, Richard Lock, Richard Gorlick, Chand Khanna, Carol J. Thiele, Mikiko Takikita, Daniel Catchpoole, Stephen M. Hewitt and Javed Khan., "Credentialing preclinical pediatric xenograft models using gene expression and tissue microarray analysis.", Cancer Research, 67(1), 32-40, 2007.
Catchpoole D.R., Lail A., Guo D., Chen Q., Khan J., "Identification of gene expression profiles that segregate patients with childhood acute lymphoblastic leukaemia: An independent validation study.", Leukaemia Research, 31(12), 1741-1747, 2007.
Stallings R.L., Nair P., Maris J.M., Catchpoole D.R., McDermott M., Breatnach F. and O'Meara A., "High resolution analysis of chromosomal breakpoints and genomic instablility identifies PTPRD as a candidate tumor suppressor gene in neuroblastoma.", Cancer Research, 66(7), 3673-3680, 2006.
Bilke S., Chen Q-R., Westerman F., Schwab M., Catchpoole D.R., and Khan J., "Inferring a tumour progression model for neuroblastoma from genomic data.", J. Clinical Oncology, 23 (29), 2005.
Astuti D., Latif F., Wagner K., Gentle D., Cooper W.N., Catchpoole D.R., Grundy R., Ferguson-Smith A.C. and Maher E., "Epigenetic alteration at the DLK-GTL2 imprinted domain in human neorplasia provides evidence for trans interaction between DLK1 and GTL2.", British Journal of Cancer, 92, 1574-1580, 2005.
Margetts C.D.E., Astuti D., Gentle D.C., Cooper W.N., Cascon A., Catchpoole D.R., Robledo M., Neumann H.P.H., Latif F. and Maher E.R., "Epigenetic analysis of HIC1, CASP8, FLIP, TSP1, DcR1, DcR2, DR4, DR5, KvDMR1, H19 and preferential 11p15.5 maternal allele loss in VHL and sporadic phaeochromocytomas.", Endocrine-Related Cancer, 12, 161-172, 2005.
